LikelyHoodWeighting
- added docs - added simple tests - added more net for testing - fixed lw errors from int to float casting
This commit is contained in:
@@ -1,34 +1,66 @@
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package net.berack.upo.ai.problem3;
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import java.security.SecureRandom;
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import java.util.HashMap;
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import java.util.Map;
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import java.util.Objects;
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import smile.Network;
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/**
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* Calcolo dei valori tramite l'algoritmo del Likelyhood Weighting
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* @author Berack
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*/
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public class LikelyhoodWeighting {
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public final Network net;
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private Map<Integer, double[]> values = new HashMap<>();
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/**
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* Inizializza un nuovo oggetto che calcolerà i valori per la rete inserita
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* @param net la rete a cui calcolare i valori
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*/
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public LikelyhoodWeighting(Network net) {
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this.net = Objects.requireNonNull(net);
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}
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public void calculate(int totalRuns) {
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/**
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* Recupera i valori del nodo dopo averli calcolati
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* Nel caso in cui non si abbia ancora fatto {@link #updateNetwork(int)} allora restituirà
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* una eccezione di tiop UnsupportedOperationException
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* @param node il nodo da vedere
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* @return l'array di valori da restituire
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*/
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public double[] getNodeValue(int node) {
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if(values.size() == 0) throw new UnsupportedOperationException("You should run first updateNetwork method");
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return values.get(node);
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}
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/**
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* Calcola i valori possibili per la rete.
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* Per poterli vedere utilizzare il metodo {@link #getNodeValue(int)}
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* @param totalRuns
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*/
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public void updateNetwork(int totalRuns) {
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totalRuns = Math.max(1, totalRuns);
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var nodes = NetworkNode.buildSetFrom(net, totalRuns);
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var nodes = SmileLib.buildListFrom(net);
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var rand = new SecureRandom();
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var prob = new double[totalRuns];
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var sum = 0.0d;
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for(var node : nodes)
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node.samples = new int[totalRuns];
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for(var run = 0; run < totalRuns; run++) {
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prob[run] = 1;
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var probRun = 1.0d;
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for(var node: nodes) {
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if(!node.isEvidence()) node.setSample(rand.nextDouble(), run);
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else prob[run] *= node.getProbSampleEvidence(run);
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else probRun *= node.getProbSampleEvidence(run);
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}
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sum += prob[run];
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prob[run] = probRun;
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sum += probRun;
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}
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for(var node : nodes) if(!node.isEvidence()) {
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@@ -39,7 +71,7 @@ public class LikelyhoodWeighting {
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for(var i = 0; i < values.length; i++)
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values[i] /= sum;
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net.setPointValues(node.handle, values);
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this.values.put(node.handle, values);
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}
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}
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}
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@@ -1,58 +1,59 @@
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package net.berack.upo.ai.problem3;
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import java.util.Arrays;
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import java.util.HashMap;
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import java.util.Set;
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import smile.Network;
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/**
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* Una classe di appoggio per i nodi di un network.
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* Questa classe contiene anche un array di samples in modo da facilitare il
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* calcolo di valori.
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*
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* @see SmileLib#buildListFrom(NetWork)
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* @author Berack
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*/
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public class NetworkNode {
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public static Set<NetworkNode> buildSetFrom(Network net, int totRounds) {
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var nodes = new HashMap<Integer, NetworkNode>();
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for(var handle : net.getAllNodes()) nodes.put(handle, new NetworkNode(net, handle));
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var retSet = Set.copyOf(nodes.values());
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for(var node : retSet) {
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var parentsHandle = net.getParents(node.handle);
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node.parents = new NetworkNode[parentsHandle.length];
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for(var i = 0; i < parentsHandle.length; i++)
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node.parents[i] = nodes.get(parentsHandle[i]);
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if(!node.isEvidence()) {
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node.samples = new int[totRounds];
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Arrays.fill(node.samples, -1);
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}
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}
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return retSet;
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}
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public static NetworkNode[] topologicalSort(Set<NetworkNode> nodes) {
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throw new UnsupportedOperationException("TODO implement this function");
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}
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final int handle;
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final String[] outcomes;
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final double[] definition;
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final int evidence;
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final Network net;
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NetworkNode[] parents;
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int[] samples;
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public int[] samples;
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private NetworkNode(Network net, int handle) {
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/**
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* Questo costruttore crea un nodo e gli assegna i valori essenziali.
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* @apiNote Non usare questo costruttore se non si sa che si sa quello che si sta facendo
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* @param net la rete
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* @param handle l'handle del nodo
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*/
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NetworkNode(Network net, int handle) {
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this.handle = handle;
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this.net = net;
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this.definition = net.getNodeDefinition(handle);
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this.outcomes = net.getOutcomeIds(handle);
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this.evidence = net.isEvidence(handle)? net.getEvidence(handle) : -1;
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}
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/**
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* Indica se il nodo è evidenza o meno
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* @return vero se lo è
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*/
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public boolean isEvidence() {
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return this.evidence > 0 ;
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}
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/**
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* Per utilizzare questo metodo il nodo deve essere una evidenza.
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* Dato un roud di sample permette di ricevere il valore della
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* probabilità che, dati i sample dei genitori, il nodo abbia
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* il valore dell'evidenza impostata.
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*
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* @param round il numero del round che si stà controllando
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* @return il valore della probabilità della evidenza
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*/
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public double getProbSampleEvidence(int round) {
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if(!this.isEvidence()) throw new IllegalArgumentException("Evidence");
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@@ -60,28 +61,44 @@ public class NetworkNode {
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return this.definition[init + this.evidence];
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}
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/**
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* Mette un sample al nodo nel round selezionato.
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* Il valore di rand deve essere un numero casuale tra 0 e 1 ed
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* esso permetterà di impostare un valore in base ai valori dei genitori.
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*
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* @param rand un valore casuale tra 0 e 1
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* @param round il numero del round
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*/
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public void setSample(double rand, int round) {
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var init = getStartingIndex(round);
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var end = init + this.outcomes.length;
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var prob = 0;
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var prob = 0.0d;
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for(var i = init; i < end; i++) {
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prob += this.definition[i];
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if(rand <= prob) {
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if(prob >= rand) {
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this.samples[round] = i - init;
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break;
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}
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}
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}
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/**
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* Dato un round permette di ricavare l'indice di partenza della CPT.
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* Questo metodo serve perchè i genitori del nodo nel sample hanno
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* dei valori e io devo generarli in accordo con la CPT di questo nodo.
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*
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* @param round il roundo corrente
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* @return l'indice iniziale per gli output del nodo in base ai valori dei genitori
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*/
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private int getStartingIndex(int round) {
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var init = 0;
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var tot = this.definition.length;
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for(var p : this.parents) {
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var pIndex = p.isEvidence()? p.evidence : p.samples[round];
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if(pIndex == -1) throw new IllegalArgumentException("Parent");
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if(pIndex < 0) throw new IllegalArgumentException("Parent"); // in theory impossible since Topological sorted
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tot /= p.outcomes.length;
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init += tot * pIndex;
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@@ -89,4 +106,16 @@ public class NetworkNode {
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return init;
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}
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@Override
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public boolean equals(Object obj) {
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if(!obj.getClass().isInstance(this)) return false;
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var other = (NetworkNode) obj;
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if(this.handle != other.handle) return false;
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if(this.evidence != other.evidence) return false;
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if(!Arrays.equals(this.definition, other.definition)) return false;
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return true;
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}
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}
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@@ -1,13 +1,24 @@
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package net.berack.upo.ai.problem3;
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import java.net.URLDecoder;
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import java.util.ArrayList;
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import java.util.HashMap;
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import java.util.List;
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import smile.Network;
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/**
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* Classe che permette l'utilizzo della libreria SMILE di BAYESFUSION.
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* La classe carica staticamente la libreria.dll creando la proprietà di
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* sistema jsmile.native.library includendo la resource path di jsmile.
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* In questo modo per utilizzare SMILE basta chiamare un metodo di questa classe
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* per far si che la chiave di attivazione venga correttamente controllata.
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*
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* @apiNote Scadenza chiave 2024-06-16
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* @author Berack
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*/
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public class SmileLib {
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public static final String RESOURCE_PATH;
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static {
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var loader = SmileLib.class.getClassLoader();
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var wrongPath = loader.getResource("").getFile();
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@@ -39,30 +50,51 @@ public class SmileLib {
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);
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}
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/**
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* Crea un Network dal file indicato
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* Il file deve essere una risorsa del jar o un file esterno
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*
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* @param file il file da cercare
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* @return il network creato
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*/
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public static Network getNetworkFrom(String file) {
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var net = new Network();
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net.readFile(RESOURCE_PATH + file);
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try {
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net.readFile(RESOURCE_PATH + file);
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} catch (smile.SMILEException e) {
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net.readFile(file);
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}
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return net;
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}
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public static void main(String[] args) throws Exception {
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var net = new Network();
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/**
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* Crea una lista di nodi dal network indicato.
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* I nodi usati sono un po' più comodi rispetto al network.
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* La lista è ordinata in modo che il nodo 'k' sia un discendente
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* dei nodi '0...k-1' e non di 'k+1...n'
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*
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* @param net il network da cui prendere i dati
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* @return una lista ordinata di nodi
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*/
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public static List<NetworkNode> buildListFrom(Network net) {
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var nodes = new HashMap<Integer, NetworkNode>();
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var list = new ArrayList<NetworkNode>();
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net.readFile(RESOURCE_PATH + "VentureBN.xdsl");
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for(var handle : net.getAllNodes()) {
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var node = new NetworkNode(net, handle);
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list.add(node);
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nodes.put(handle, node);
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}
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var nodes = net.getAllNodes();
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for (var i = 0; i < nodes.length; i++) {
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System.out.println(nodes[i] + " -> " + net.getNodeId(nodes[i]));
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for(var node : nodes.values()) {
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var parentsHandle = net.getParents(node.handle);
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node.parents = new NetworkNode[parentsHandle.length];
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for(var i = 0; i < parentsHandle.length; i++)
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node.parents[i] = nodes.get(parentsHandle[i]);
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}
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return list;
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}
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net.setEvidence("Forecast", "Moderate");
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net.updateBeliefs();
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var beliefs = net.getNodeValue("Success");
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for (var i = 0; i < beliefs.length; i++) {
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System.out.println(net.getOutcomeId("Success", i) + " = " + beliefs[i]);
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}
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net.close();
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}
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}
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46
src/test/java/net/berack/upo/ai/problem3/LWTest.java
Normal file
46
src/test/java/net/berack/upo/ai/problem3/LWTest.java
Normal file
@@ -0,0 +1,46 @@
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package net.berack.upo.ai.problem3;
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import static org.junit.jupiter.api.Assertions.assertArrayEquals;
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import java.util.Arrays;
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import org.junit.jupiter.api.Test;
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public class LWTest {
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@Test
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public void testSmile() {
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var net = SmileLib.getNetworkFrom("VentureBN.xdsl");
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var nodes = net.getAllNodes();
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for (var i = 0; i < nodes.length; i++) {
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System.out.println(nodes[i] + " -> " + net.getNodeId(nodes[i]));
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}
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net.setEvidence("Forecast", "Moderate");
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net.updateBeliefs();
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var beliefs = net.getNodeValue("Success");
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var arr = new double[] {0.25, 0.75};
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assertArrayEquals(arr, beliefs, 0.001);
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net.close();
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}
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@Test
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public void testSimpleNetwork() {
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var net = SmileLib.getNetworkFrom("VentureBN.xdsl");
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net.updateBeliefs();
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var lw = new LikelyhoodWeighting(net);
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lw.updateNetwork(1000);
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for(var node : net.getAllNodes()) {
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var arr1 = net.getNodeValue(node);
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var arr2 = lw.getNodeValue(node);
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System.out.println(Arrays.toString(arr1) + " " + Arrays.toString(arr2));
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assertArrayEquals(arr1, arr2, 0.05); // 5% difference max (it is a lot but is fair)
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}
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}
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}
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146
src/test/resources/Airport.xdsl
Normal file
146
src/test/resources/Airport.xdsl
Normal file
@@ -0,0 +1,146 @@
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<?xml version="1.0" encoding="UTF-8"?>
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<!-- This network was created in GeNIe Academic, which can be used for academic teaching and research purposes only -->
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<smile version="1.0" id="Network1" numsamples="1000" discsamples="10000">
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<nodes>
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<decision id="AirportSite">
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<state id="Isolated" />
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<state id="Suburbs" />
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<state id="Town" />
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</decision>
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<cpt id="AirTraffic">
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<state id="low" />
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<state id="high" />
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<probabilities>0.3 0.7</probabilities>
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</cpt>
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<cpt id="Litigation">
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<state id="low" />
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<state id="high" />
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<probabilities>0.2 0.8</probabilities>
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</cpt>
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<cpt id="Construction">
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<state id="low" />
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<state id="high" />
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<probabilities>0.4 0.6</probabilities>
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</cpt>
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<cpt id="Deaths">
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<state id="safe" />
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<state id="unsafe" />
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<parents>AirTraffic AirportSite</parents>
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<probabilities>0.9 0.09999999999999998 0.7 0.3 0.7 0.3 0.8 0.2 0.6 0.4 0.4 0.6</probabilities>
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</cpt>
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<cpt id="Noise">
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<state id="tolerable" />
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<state id="untolerable" />
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<parents>AirTraffic AirportSite</parents>
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<probabilities>0.9 0.09999999999999998 0.8 0.2 0.7 0.3 0.7 0.3 0.4 0.6 0.2 0.8</probabilities>
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</cpt>
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<cpt id="Cost">
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<state id="low" />
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<state id="high" />
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<parents>Litigation Construction AirportSite</parents>
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<probabilities>0.9 0.09999999999999998 0.8 0.2 0.75 0.25 0.3 0.7 0.25 0.75 0.2 0.8 0.4 0.6 0.5 0.5 0.45 0.55 0.3 0.7 0.2 0.8 0.09999999999999998 0.9</probabilities>
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</cpt>
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<utility id="UD">
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<parents>Deaths</parents>
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<utilities>1 0</utilities>
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</utility>
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<utility id="UN">
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<parents>Noise</parents>
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<utilities>1 0</utilities>
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</utility>
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<utility id="UC">
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<parents>Cost</parents>
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<utilities>1 0</utilities>
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</utility>
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<mau id="U">
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<parents>UC UD UN</parents>
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<weights>2 10 1</weights>
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</mau>
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</nodes>
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<extensions>
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<genie version="1.0" app="GeNIe 4.1.3402.0 ACADEMIC" name="Airport">
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<node id="AirportSite">
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<name>AirportSite</name>
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<interior color="e5f6f7" />
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<outline color="000080" />
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<font color="000000" name="Arial" size="8" />
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<position>440 289 503 315</position>
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</node>
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<node id="AirTraffic">
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<name>AirTraffic</name>
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<interior color="e5f6f7" />
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<outline color="000080" />
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<font color="000000" name="Arial" size="8" />
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<position>375 62 436 100</position>
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</node>
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<node id="Litigation">
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<name>Litigation</name>
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<interior color="e5f6f7" />
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<outline color="000080" />
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<font color="000000" name="Arial" size="8" />
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<position>375 138 432 173</position>
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</node>
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<node id="Construction">
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<name>Construction</name>
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<interior color="e5f6f7" />
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||||
<outline color="000080" />
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||||
<font color="000000" name="Arial" size="8" />
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||||
<position>365 211 440 257</position>
|
||||
</node>
|
||||
<node id="Deaths">
|
||||
<name>Deaths</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>558 62 609 93</position>
|
||||
</node>
|
||||
<node id="Noise">
|
||||
<name>Noise</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>564 138 609 166</position>
|
||||
</node>
|
||||
<node id="Cost">
|
||||
<name>Cost</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>567 221 609 247</position>
|
||||
</node>
|
||||
<textbox>
|
||||
<caption>Per l'utilita' data:\nsi suppone di considerare le seguenti\npriorita' o preferenze:\nSafety, Tollerabilita' rumore, Costo\nCio' implica che tutte le utilita' con Deaths=Safe devono essere maggiori di quelle con Deaths=Unsafe, che, specificato Deaths, quelle con Noise=tolerable devono essere maggiori di quelle con Noise=untolerable e in subordine quelle con Cost=low maggiori di quelle con Cost=high</caption>
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>28 32 221 200</position>
|
||||
</textbox>
|
||||
<node id="UD">
|
||||
<name>UD</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>716 72 750 104</position>
|
||||
</node>
|
||||
<node id="UN">
|
||||
<name>UN</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>723 153 757 185</position>
|
||||
</node>
|
||||
<node id="UC">
|
||||
<name>UC</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>741 231 775 263</position>
|
||||
</node>
|
||||
<node id="U">
|
||||
<name>U</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>886 168 913 200</position>
|
||||
</node>
|
||||
</genie>
|
||||
</extensions>
|
||||
</smile>
|
||||
92
src/test/resources/AppleTree.xdsl
Normal file
92
src/test/resources/AppleTree.xdsl
Normal file
@@ -0,0 +1,92 @@
|
||||
<?xml version="1.0" encoding="ISO-8859-1"?>
|
||||
<!-- This network was created in GeNIe Academic, which can be used for educational and research purposes only -->
|
||||
<smile version="1.0" id="AppleTree" numsamples="1000" discsamples="10000">
|
||||
<nodes>
|
||||
<cpt id="Malato" dynamic="plate">
|
||||
<state id="Si" />
|
||||
<state id="No" />
|
||||
<probabilities>0.1 0.9</probabilities>
|
||||
</cpt>
|
||||
<cpt id="Secco" dynamic="plate">
|
||||
<state id="Si" />
|
||||
<state id="No" />
|
||||
<probabilities>0.1 0.9</probabilities>
|
||||
</cpt>
|
||||
<cpt id="PerditaFoglie" dynamic="plate">
|
||||
<state id="Si" />
|
||||
<state id="No" />
|
||||
<parents>Malato Secco</parents>
|
||||
<probabilities>0.95 0.05000000000000004 0.9 0.09999999999999998 0.85 0.15 0.02 0.98</probabilities>
|
||||
</cpt>
|
||||
<decision id="Trattamento" dynamic="plate">
|
||||
<state id="Si" />
|
||||
<state id="No" />
|
||||
<parents>PerditaFoglie</parents>
|
||||
</decision>
|
||||
<utility id="CostoT" dynamic="plate">
|
||||
<parents>Trattamento</parents>
|
||||
<utilities>-8000 0</utilities>
|
||||
</utility>
|
||||
<utility id="U" dynamic="plate">
|
||||
<parents>Malato</parents>
|
||||
<utilities>3000 20000</utilities>
|
||||
</utility>
|
||||
</nodes>
|
||||
<dynamic numslices="5">
|
||||
<cpt id="Malato" order="1">
|
||||
<parents>Malato Trattamento</parents>
|
||||
<probabilities>0.2 0.8 0.99 0.01 0.01000000000000001 0.99 0.02000000000000002 0.98</probabilities>
|
||||
</cpt>
|
||||
<cpt id="Secco" order="1">
|
||||
<parents>Secco</parents>
|
||||
<probabilities>0.6 0.4 0.05000000000000004 0.95</probabilities>
|
||||
</cpt>
|
||||
</dynamic>
|
||||
<extensions>
|
||||
<genie version="1.0" app="GeNIe 2.1.621.1 ACADEMIC" name="AppleTree" faultnameformat="nodestate">
|
||||
<plate leftwidth="120" rightwidth="120">20 30 819 509</plate>
|
||||
<node id="Malato">
|
||||
<name>Malato</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="14" />
|
||||
<position>228 205 302 251</position>
|
||||
</node>
|
||||
<node id="Secco">
|
||||
<name>Secco</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="14" />
|
||||
<position>226 87 300 133</position>
|
||||
</node>
|
||||
<node id="PerditaFoglie">
|
||||
<name>PerditaFoglie</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="14" />
|
||||
<position>382 143 508 221</position>
|
||||
</node>
|
||||
<node id="Trattamento">
|
||||
<name>Trattamento</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="14" />
|
||||
<position>311 304 424 338</position>
|
||||
</node>
|
||||
<node id="CostoT">
|
||||
<name>CostoT</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="14" />
|
||||
<position>327 382 418 472</position>
|
||||
</node>
|
||||
<node id="U">
|
||||
<name>U</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="14" />
|
||||
<position>584 295 625 343</position>
|
||||
</node>
|
||||
</genie>
|
||||
</extensions>
|
||||
</smile>
|
||||
65
src/test/resources/Cloudy.xdsl
Normal file
65
src/test/resources/Cloudy.xdsl
Normal file
@@ -0,0 +1,65 @@
|
||||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<!-- This network was created in GeNIe Academic, which can be used for academic teaching and research purposes only -->
|
||||
<smile version="1.0" id="Cloudy" numsamples="10000" discsamples="10000">
|
||||
<nodes>
|
||||
<cpt id="Cloudy">
|
||||
<state id="true" />
|
||||
<state id="false" />
|
||||
<probabilities>0.5 0.5</probabilities>
|
||||
</cpt>
|
||||
<cpt id="Sprinkler">
|
||||
<state id="true" />
|
||||
<state id="false" />
|
||||
<parents>Cloudy</parents>
|
||||
<probabilities>0.1 0.9 0.5 0.5</probabilities>
|
||||
</cpt>
|
||||
<cpt id="Rain">
|
||||
<state id="true" />
|
||||
<state id="false" />
|
||||
<parents>Cloudy</parents>
|
||||
<probabilities>0.8 0.2 0.2 0.8</probabilities>
|
||||
</cpt>
|
||||
<cpt id="WetGrass">
|
||||
<state id="true" />
|
||||
<state id="false" />
|
||||
<parents>Rain Sprinkler</parents>
|
||||
<probabilities>0.99 0.01000000000000001 0.9 0.09999999999999998 0.9 0.09999999999999998 0.01 0.99</probabilities>
|
||||
</cpt>
|
||||
</nodes>
|
||||
<extensions>
|
||||
<genie version="1.0" app="GeNIe 4.1.3402.0 ACADEMIC" name="Cloudy">
|
||||
<node id="Cloudy">
|
||||
<name>Cloudy</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="14" />
|
||||
<position>498 107 576 155</position>
|
||||
<barchart active="true" width="128" height="78" />
|
||||
</node>
|
||||
<node id="Sprinkler">
|
||||
<name>Sprinkler</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="14" />
|
||||
<position>371 233 462 289</position>
|
||||
<barchart active="true" width="128" height="78" />
|
||||
</node>
|
||||
<node id="Rain">
|
||||
<name>Rain</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="14" />
|
||||
<position>646 236 708 274</position>
|
||||
<barchart active="true" width="128" height="78" />
|
||||
</node>
|
||||
<node id="WetGrass">
|
||||
<name>WetGrass</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="14" />
|
||||
<position>498 329 600 392</position>
|
||||
<barchart active="true" width="128" height="78" />
|
||||
</node>
|
||||
</genie>
|
||||
</extensions>
|
||||
</smile>
|
||||
56
src/test/resources/Malaria.xdsl
Normal file
56
src/test/resources/Malaria.xdsl
Normal file
@@ -0,0 +1,56 @@
|
||||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<!-- This network was created in GeNIe Academic, which can be used for academic teaching and research purposes only -->
|
||||
<smile version="1.0" id="Malaria" numsamples="10000" discsamples="10000">
|
||||
<nodes>
|
||||
<cpt id="Infliuenza">
|
||||
<state id="forte" />
|
||||
<state id="leggera" />
|
||||
<state id="assente" />
|
||||
<probabilities>0.3333333333333333 0.3333333333333333 0.3333333333333334</probabilities>
|
||||
<property id="DSL_OUTCOME_ORDER">-1</property>
|
||||
</cpt>
|
||||
<cpt id="Malaria">
|
||||
<state id="presente" />
|
||||
<state id="assente" />
|
||||
<probabilities>0.5 0.5</probabilities>
|
||||
<property id="DSL_OUTCOME_ORDER">-1</property>
|
||||
</cpt>
|
||||
<noisymax id="Febbre">
|
||||
<state id="alta" />
|
||||
<state id="bassa" />
|
||||
<state id="assente" />
|
||||
<parents>Infliuenza Malaria</parents>
|
||||
<strengths>0 1 2 0 1</strengths>
|
||||
<parameters>0.99 0.01 0 0.4 0.55 0.04999999999999993 0 0 1 0.999 0.001 0 0 0 1 0.01000000000000001 0.09999999999999998 0.89</parameters>
|
||||
<property id="DSL_OUTCOME_ORDER">-1</property>
|
||||
</noisymax>
|
||||
</nodes>
|
||||
<extensions>
|
||||
<genie version="1.0" app="GeNIe 4.1.3402.0 ACADEMIC" name="Malaria">
|
||||
<node id="Infliuenza">
|
||||
<name>Infliuenza</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="14" />
|
||||
<position>338 118 434 178</position>
|
||||
<barchart active="true" width="179" height="104" />
|
||||
</node>
|
||||
<node id="Malaria">
|
||||
<name>Malaria</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="14" />
|
||||
<position>645 111 723 159</position>
|
||||
<barchart active="true" width="177" height="78" />
|
||||
</node>
|
||||
<node id="Febbre">
|
||||
<name>Febbre</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="14" />
|
||||
<position>524 310 605 360</position>
|
||||
<barchart active="true" width="183" height="110" />
|
||||
</node>
|
||||
</genie>
|
||||
</extensions>
|
||||
</smile>
|
||||
89
src/test/resources/Micromorti.xdsl
Normal file
89
src/test/resources/Micromorti.xdsl
Normal file
@@ -0,0 +1,89 @@
|
||||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<!-- This network was created in GeNIe Academic, which can be used for academic teaching and research purposes only -->
|
||||
<smile version="1.0" id="Network1" numsamples="1000" discsamples="10000">
|
||||
<nodes>
|
||||
<cpt id="Malattia">
|
||||
<state id="yes" />
|
||||
<state id="no" />
|
||||
<probabilities>0.5 0.5</probabilities>
|
||||
</cpt>
|
||||
<cpt id="Sintomo">
|
||||
<state id="yes" />
|
||||
<state id="no" />
|
||||
<parents>Malattia</parents>
|
||||
<probabilities>0.99 0.01000000000000001 0.15 0.85</probabilities>
|
||||
</cpt>
|
||||
<decision id="Test">
|
||||
<state id="si" />
|
||||
<state id="no" />
|
||||
<parents>Sintomo</parents>
|
||||
</decision>
|
||||
<cpt id="RisultatoTest">
|
||||
<state id="pos" />
|
||||
<state id="neg" />
|
||||
<state id="nessuno" />
|
||||
<parents>Test Malattia</parents>
|
||||
<probabilities>0.95 0.05000000000000004 0 0.01000000000000001 0.99 0 0 0 1 0 0 1</probabilities>
|
||||
</cpt>
|
||||
<decision id="Intervento">
|
||||
<state id="si" />
|
||||
<state id="no" />
|
||||
<parents>RisultatoTest</parents>
|
||||
</decision>
|
||||
<utility id="U">
|
||||
<parents>Malattia Intervento</parents>
|
||||
<utilities>0.9871992685296302 0 0.9992856734670552 1</utilities>
|
||||
</utility>
|
||||
</nodes>
|
||||
<extensions>
|
||||
<genie version="1.0" app="GeNIe 4.1.3402.0 ACADEMIC" name="Micromorti">
|
||||
<node id="Malattia">
|
||||
<name>Malattia</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>283 79 335 111</position>
|
||||
</node>
|
||||
<node id="Sintomo">
|
||||
<name>Sintomo</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>285 185 339 218</position>
|
||||
</node>
|
||||
<node id="Test">
|
||||
<name>Test</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>416 189 449 215</position>
|
||||
</node>
|
||||
<node id="RisultatoTest">
|
||||
<name>RisultatoTest</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>443 60 518 106</position>
|
||||
</node>
|
||||
<node id="Intervento">
|
||||
<name>Intervento</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>571 188 631 214</position>
|
||||
</node>
|
||||
<node id="U">
|
||||
<name>U</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>448 306 475 338</position>
|
||||
</node>
|
||||
<textbox>
|
||||
<caption>(MM) Micromorte=1 probabilita' su un millione di morire entro l'anno\nStima: 1 MM=$20\n\nUna probabilita' p e' quindi = p*10^6 MM\n(facendo una proporzione p:x=10^-6:1)\n\nAvere la malattia e non intervenire comporta un rischio pari ad una probabilita' del 35% di morire entro l'anno.\nCio' e' pari a 350.000 MM ossia $7Millioni\n\nIntervenire sulla malattia abbassa tale probabilita' per il nostro paziente a 0.0002=200MM=$4000\n\nSe il ns paziente non e' malato la sua aspettativa di vita e' tale che la prob. che muoia entro l'anno e' 1/50000=20MM=$400\n\nL'intervento non e' rischioso (quindi si tralascia di stimare quante micromorti vale l'intervento in assenza di malattia)\n\nSupponiamo che l'intervento costi $5000\n\nLa funzione di utilita' si puo' calcolare usando questi costi\nU(no M, no I)=-400\nU(no M, I)=-400-5000\nU(M, no I)=-7M\nU(M, I)=-4000-5000\n\nRinormalizzata a 1 e' come appare nell'ID\n</caption>
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>3 21 230 497</position>
|
||||
</textbox>
|
||||
</genie>
|
||||
</extensions>
|
||||
</smile>
|
||||
65
src/test/resources/WetGrass.xdsl
Normal file
65
src/test/resources/WetGrass.xdsl
Normal file
@@ -0,0 +1,65 @@
|
||||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<!-- This network was created in GeNIe Academic, which can be used for academic teaching and research purposes only -->
|
||||
<smile version="1.0" id="WetGrass" numsamples="10000" discsamples="10000">
|
||||
<nodes>
|
||||
<cpt id="Cloudy">
|
||||
<state id="Si" />
|
||||
<state id="No" />
|
||||
<probabilities>0.4 0.6</probabilities>
|
||||
</cpt>
|
||||
<cpt id="Rain">
|
||||
<state id="True" />
|
||||
<state id="False" />
|
||||
<parents>Cloudy</parents>
|
||||
<probabilities>0.7000000000000001 0.3 0.4 0.6</probabilities>
|
||||
</cpt>
|
||||
<cpt id="Sprinkler">
|
||||
<state id="On" />
|
||||
<state id="Off" />
|
||||
<parents>Cloudy</parents>
|
||||
<probabilities>0.1 0.9 0.5 0.5</probabilities>
|
||||
</cpt>
|
||||
<cpt id="Wet_grass">
|
||||
<state id="Bagnata" />
|
||||
<state id="Asciutta" />
|
||||
<parents>Sprinkler Rain</parents>
|
||||
<probabilities>0.99 0.01000000000000001 0.85 0.15 0.9 0.09999999999999998 0.1 0.9</probabilities>
|
||||
</cpt>
|
||||
</nodes>
|
||||
<extensions>
|
||||
<genie version="1.0" app="GeNIe 4.1.3402.0 ACADEMIC" name="WetGrass">
|
||||
<node id="Cloudy">
|
||||
<name>Cloudy</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>360 82 442 143</position>
|
||||
<barchart active="true" />
|
||||
</node>
|
||||
<node id="Rain">
|
||||
<name>Rain</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>508 217 583 273</position>
|
||||
<barchart active="true" />
|
||||
</node>
|
||||
<node id="Sprinkler">
|
||||
<name>Sprinkler</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>214 216 305 282</position>
|
||||
<barchart active="true" />
|
||||
</node>
|
||||
<node id="Wet_grass">
|
||||
<name>Wet grass</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>357 337 455 408</position>
|
||||
<barchart active="true" />
|
||||
</node>
|
||||
</genie>
|
||||
</extensions>
|
||||
</smile>
|
||||
160
src/test/resources/lucas96simp.xdsl
Normal file
160
src/test/resources/lucas96simp.xdsl
Normal file
@@ -0,0 +1,160 @@
|
||||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<!-- This network was created in GeNIe Academic, which can be used for academic teaching and research purposes only -->
|
||||
<smile version="1.0" id="Network4" numsamples="1000" discsamples="10000">
|
||||
<nodes>
|
||||
<cpt id="Age">
|
||||
<state id="child" />
|
||||
<state id="adult" />
|
||||
<state id="elderly" />
|
||||
<probabilities>0.3333333333333333 0.3333333333333333 0.3333333333333334</probabilities>
|
||||
</cpt>
|
||||
<cpt id="Heart_failiure">
|
||||
<state id="yes" />
|
||||
<state id="no" />
|
||||
<parents>Age</parents>
|
||||
<probabilities>0.05 0.95 0.5 0.5 0.8 0.2</probabilities>
|
||||
<property id="DSL_OUTCOME_ORDER">-1</property>
|
||||
</cpt>
|
||||
<cpt id="dyspnea">
|
||||
<state id="yes" />
|
||||
<state id="no" />
|
||||
<parents>Heart_failiure</parents>
|
||||
<probabilities>0.95 0.05000000000000004 0.1 0.9</probabilities>
|
||||
</cpt>
|
||||
<cpt id="tachycpnea">
|
||||
<state id="yes" />
|
||||
<state id="no" />
|
||||
<parents>dyspnea</parents>
|
||||
<probabilities>0.98 0.02000000000000002 0.2 0.8</probabilities>
|
||||
</cpt>
|
||||
<cpt id="tachicardia">
|
||||
<state id="yes" />
|
||||
<state id="no" />
|
||||
<parents>dyspnea</parents>
|
||||
<probabilities>0.95 0.05000000000000004 0.1 0.9</probabilities>
|
||||
</cpt>
|
||||
<cpt id="PulmonaryCrepitations">
|
||||
<state id="yes" />
|
||||
<state id="no" />
|
||||
<parents>Heart_failiure</parents>
|
||||
<probabilities>0.7 0.3 0.15 0.85</probabilities>
|
||||
</cpt>
|
||||
<decision id="treatment">
|
||||
<state id="yes" />
|
||||
<state id="no" />
|
||||
<parents>Age tachycpnea tachicardia PulmonaryCrepitations</parents>
|
||||
<property id="DSL_OUTCOME_ORDER">-1</property>
|
||||
</decision>
|
||||
<cpt id="intermdiate_result">
|
||||
<state id="bad" />
|
||||
<state id="good" />
|
||||
<parents>treatment Heart_failiure Age</parents>
|
||||
<probabilities>0.6 0.4 0.45 0.55 0.65 0.35 0.1 0.9 0.15 0.85 0.18 0.8200000000000001 0.6 0.4 0.8 0.2 0.95 0.05000000000000004 0.1 0.9 0.15 0.85 0.18 0.8200000000000001</probabilities>
|
||||
<property id="DSL_OUTCOME_ORDER">-1</property>
|
||||
</cpt>
|
||||
<cpt id="Late_complications">
|
||||
<state id="yes" />
|
||||
<state id="no" />
|
||||
<parents>intermdiate_result treatment</parents>
|
||||
<probabilities>0.5 0.5 0.95 0.05000000000000004 0.01 0.99 0.1 0.9</probabilities>
|
||||
</cpt>
|
||||
<utility id="U">
|
||||
<parents>treatment intermdiate_result Late_complications</parents>
|
||||
<utilities>0 0.6 0.4 0.8 0.3 0.7 0.5 1</utilities>
|
||||
</utility>
|
||||
</nodes>
|
||||
<extensions>
|
||||
<genie version="1.0" app="GeNIe 4.1.3402.0 ACADEMIC" name="Treatment">
|
||||
<node id="Age">
|
||||
<name>Age</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>599 419 640 444</position>
|
||||
</node>
|
||||
<node id="Heart_failiure">
|
||||
<name>Heart_failiure</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>386 329 462 376</position>
|
||||
</node>
|
||||
<node id="dyspnea">
|
||||
<name>dyspnea</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>387 197 480 221</position>
|
||||
</node>
|
||||
<node id="tachycpnea">
|
||||
<name>tachycpnea</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>385 102 451 143</position>
|
||||
</node>
|
||||
<node id="tachicardia">
|
||||
<name>tachiycardia</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>543 203 609 244</position>
|
||||
</node>
|
||||
<node id="PulmonaryCrepitations">
|
||||
<name>pulmonary crepitations</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>532 278 610 326</position>
|
||||
</node>
|
||||
<textbox>
|
||||
<caption>aumento velocita' respirazione</caption>
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>333 86 479 100</position>
|
||||
</textbox>
|
||||
<textbox>
|
||||
<caption>aumento velocita' cardiaca</caption>
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>513 187 641 201</position>
|
||||
</textbox>
|
||||
<textbox>
|
||||
<caption>difficolta' a respirare</caption>
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>285 198 384 212</position>
|
||||
</textbox>
|
||||
<node id="treatment">
|
||||
<name>treatment</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>713 177 770 203</position>
|
||||
</node>
|
||||
<node id="intermdiate_result">
|
||||
<name>intermdiate result</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>619 643 712 701</position>
|
||||
</node>
|
||||
<node id="Late_complications">
|
||||
<name>Late complications</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>863 432 962 493</position>
|
||||
</node>
|
||||
<node id="U">
|
||||
<name>U</name>
|
||||
<interior color="e5f6f7" />
|
||||
<outline color="000080" />
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>775 429 802 461</position>
|
||||
</node>
|
||||
<textbox>
|
||||
<caption>Utilita' graduata considerando LateComplications piu' importante di IntermideiaResult piu' importante di costo trattamento</caption>
|
||||
<font color="000000" name="Arial" size="8" />
|
||||
<position>85 74 279 130</position>
|
||||
</textbox>
|
||||
</genie>
|
||||
</extensions>
|
||||
</smile>
|
||||
Reference in New Issue
Block a user